Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Drug repositioning based on bounded nuclear nor...

Sponsored · Your Podcast. Everywhere. Effortlessly. Share. Educate. Inspire. Entertain. You do you. We'll handle the rest.
Avatar for 土屋貴穂 土屋貴穂
August 19, 2019

Drug repositioning based on bounded nuclear norm regularization

ISMB/ECCB 2019読み会
Drug repositioning based on bounded nuclear norm regularization
http://dx.doi.org/10.1093/bioinformatics/bty013

Avatar for 土屋貴穂

土屋貴穂

August 19, 2019
Tweet

Other Decks in Science

Transcript

  1. ࠓճ෮ݩ͍ͨ͠ߦྻ͸%SVH%JTFBTFؔ܎ͷྡ઀ߦྻ  طଘༀͷ৽ͨͳదԠ঱ྫΛެ։σʔλ͔Βਪఆ͍ͨ͠ <-VPFUBM #JPJOGPSNBUJDT > Data setはGottlieb et al,

    2011のもの # Gold standardなデータセット l 593 drugs l 313 diseases l 1933 validated Drug-Disease associations ただし… Drug-Disease associationsは 全組み合わせのうち 約99%が未知のスパースな行列データ ノイズも多分に含むという 対処すべき問題があった
  2. ϊΠζΛߟྀͨ͠ਖ਼ଇԽͰैདྷख๏ʹ΄΅׬উͨ͠  l ઌ΄Ͳͷߦྻ෮ݩ໰୊ࣗମ͸ຊ࿦จใࠂάϧʔϓʹΑΓطʹੑೳྑ͘ ղ͘ΞϧΰϦζϜ͕ใࠂ͞Ε͍ͯΔ <-VPFUBM #JPJOGPSNBUJDT > l ຊ࿦จͰ͸ϊΠζΛߟྀͨ͠ਖ਼ଇԽʹΑΓ͞ΒʹੑೳΛ޲্ͤͨ͞

    ˠ εύʔεͳσʔλʹ༗༻ͳख๏͕ධՁ͞Εͯ࠾୒͞ΕͨͷͰ͸ (JUIVCͰίʔυ͸ެ։͞Ε͍ͯͯɺ."5-"#Ͱ࣮૷͞Ε͍ͯΔ ఏҊख๏ #ounded Nuclear Norm Regularization (BNNR) ैདྷख๏
  3. ఏҊख๏Ͱ͸ϊΠζ·Ͱ෮ݩ͠ͳ͍Α͏ਖ਼ଇԽͨ͠  ఏҊख๏ #ounded Nuclear Norm Regularization (BNNR) ैདྷख๏ ஶऀΒͷΞϓϩʔν

    ϊΠζ ϊΠζͷਪఆ͸ݱ࣮తͰ͸ͳ͍ͱͯ͠ɺ̎ͭͷ੍໿ΛೖΕͯ໰୊Λ؇࿨ͨ͠ Ћͷ஋͸ࠓճ༻͍ͨσʔληοτʹ ରͯ͠GPMEDSPTTWBMJEBUJPOΛߦ͍ ࠷΋ੑೳ͕ߴ͘ͳΔΑ͏ʹܾఆͨ͠