Conda - Easier Installs and Simpler Builds

Basic Usage of Conda for installation, management of environments, and building packages.

A Talk at EuroPython 2016

Transcript

1. Conda Easier Installs and Simpler Builds Dr. Mike Müller mmueller@python-academy.de @pyacademy EuroPython 2016 Bilbao, Spain Python Academy GmbH & Co. KG
2. Conda is An installer similar to pip An environment manager similar to virtualenv Cross-platform Not limited to Python Strong in the scientific community Useful for all Python users
3. Conda is BSD licensed Included in: Miniconda or Anaconda
4. Miniconda Small bootstrap-like version Includes Python and conda, as well as dependencies and helpers (pip, wheel, setuptools, etc.) Provides access to many hundreds (or thousands) of mainly scientific packages They are just a conda install away
5. Anaconda Large distribution of Python packages with focus on scientific applications Includes Python, conda, conda-build and about 200 scientific packages (new ones get added continuously) Needs about 2 GB of disk space One-stop install with all essential scientific Python tools
6. Channels Locations of packages default == Anaconda server conda-forge Private channels install -c my_channel package_name
7. Basic Tasks Install packages Create and administer environments Create packages
8. Search $ conda search pandas Using Anaconda Cloud api site https://api.anaconda.org Fetching package metadata ........... geopandas 0.1.1 py27_0 conda-forge/o sx-64 ... 0.2 py35_0 conda-forge/ osx-64 pandas 0.8.1 np16py26_0 defaults ... . 0.16.2 np19py34_0 defaults ... * 0.18.1 np110py35_0 defaults 0.18.1 np110py35_0 conda-forge/o sx-64 0.18.1 np111py27_0 conda-forge/o sx-64 0.18.1 np111py27_0 defaults 0.18.1 np111py34_0 defaults 0.18.1 np111py34_0 conda-forge/o sx-64 . 0.18.1 np111py35_0 conda-forge/o
9. Search with Exact Match conda search --full-name pandas Using Anaconda Cloud api site https://api.anaconda.org Fetching package metadata ........... pandas 0.8.1 np16py26_0 defaults 0.8.1 np16py27_0 defaults ... . 0.17.1 np110py35_0 defaults 0.18.0 np110py27_0 defaults 0.18.0 np110py34_0 defaults 0.18.0 np110py35_0 defaults 0.18.0 np111py27_0 defaults 0.18.0 np111py34_0 defaults 0.18.0 np111py35_0 defaults 0.18.1 np110py27_0 conda-forge/o sx-64 * 0.18.1 np110py27_0 defaults
10. Search for Platform and Version conda search --platform win-32 --spec pandas=0.18.1 Using Anaconda Cloud api site https://api.anaconda.org Fetching package metadata ........... pandas 0.18.1 np110py27_0 conda-forge/w in-32 0.18.1 np110py27_0 defaults 0.18.1 np110py34_0 defaults 0.18.1 np110py34_0 conda-forge/w in-32 0.18.1 np110py35_0 defaults 0.18.1 np110py35_0 conda-forge/w in-32 0.18.1 np111py27_0 conda-forge/w in-32 0.18.1 np111py27_0 defaults 0.18.1 np111py34_0 defaults 0.18.1 np111py34_0 conda-forge/w in-32 0.18.1 np111py35_0 conda-forge/w in-32 0.18.1 np111py35_0 defaults
11. Install a Package conda install pandas Using Anaconda Cloud api site https://api.anaconda.org Fetching package metadata ........... Solving package specifications: .......... Package plan for installation in environment /Users/mike/anaconda/envs/mypy35: The following NEW packages will be INSTALLED: mkl: 11.3.3-0 numpy: 1.11.1-py35_0 pandas: 0.18.1-np111py35_0 conda-forge python-dateutil: 2.5.2-py35_0 conda-forge pytz: 2016.3-py35_0 conda-forge six: 1.10.0-py35_0 conda-forge Proceed ([y]/n)? Linking packages ... [ COMPLETE ]|###################################| 100%
12. Create an Environment I $ conda create -n mypy35 python=3.5 Using Anaconda Cloud api site https://api.anaconda.org Fetching package metadata ....... Solving package specifications: .......... Package plan for installation in environment /Users/mike/anaconda/envs/mypy35: The following packages will be downloaded: package | build ---------------------------|----------------- setuptools-23.0.0 | py35_0 461 KB conda-forg e The following NEW packages will be INSTALLED: ca-certificates: 2016.2.28-1 conda-forge ncurses: 5.9-7 conda-forge openssl: 1.0.2h-0 conda-forge pip: 8.1.2-py35_0 python: 3.5.2-1 conda-forge readline: 6.2-0 conda-forge setuptools: 23.0.0-py35_0 conda-forge sqlite: 3.13.0-1 conda-forge tk: 8.5.19-0 conda-forge wheel: 0.29.0-py35_0 xz: 5.2.2-0 conda-forge
13. Create an Environment II Pruning fetched packages from the cache ... Fetching packages ... setuptools-23. 100% |############################## #######| Time: 0:00:05 89.34 kB/s Extracting packages ... [ COMPLETE ]|###################################| 100% Linking packages ... [ COMPLETE ]|###################################| 100% # # To activate this environment, use: # $ source activate mypy35
14. Show Environments conda env list # conda environments: # fipy_py26 /Users/mike/anaconda/envs/fipy_py26 fipy_py27 /Users/mike/anaconda/envs/fipy_py27 fipy_py34 /Users/mike/anaconda/envs/fipy_py34 fipy_py35 /Users/mike/anaconda/envs/fipy_py35 mypy35 /Users/mike/anaconda/envs/mypy35 py26 /Users/mike/anaconda/envs/py26 py27 /Users/mike/anaconda/envs/py27 py33 /Users/mike/anaconda/envs/py33 py34 /Users/mike/anaconda/envs/py34 py35 /Users/mike/anaconda/envs/py35 py35_test /Users/mike/anaconda/envs/py35_test pydatabln2016 /Users/mike/anaconda/envs/pydatabln2016 tensorflow /Users/mike/anaconda/envs/tensorflow root * /Users/mike/anaconda
15. Activate an Environment Linux, OS X Windows # $ source activate mypy35 # $ activate mypy35
16. Environment Marked as Active conda env list ... mypy35 * /Users/mike/anaconda/envs/mypy35
17. List All Installed Packages conda list # packages in environment at /Users/mike/anaconda/envs/mypy35: # ca-certificates 2016.2.28 1 conda-forge ncurses 5.9 7 conda-forge openssl 1.0.2h 0 conda-forge pandas 0.18.1 np111py35_0 conda-forge python 3.5.2 1 conda-forge python-dateutil 2.5.2 py35_0 conda-forge pytz 2016.3 py35_0 conda-forge readline 6.2 0 conda-forge setuptools 23.0.0 py35_0 conda-forge six 1.10.0 py35_0 conda-forge sqlite 3.13.0 1 conda-forge tk 8.5.19 0 conda-forge xz 5.2.2 0 conda-forge zlib 1.2.8 3 conda-forge mkl 11.3.3 0 numpy 1.11.1 py35_0 phreeqpy 0.2.0 <pip> pip 8.1.2 py35_0 wheel 0.29.0 py35_0
18. Building a Package 1. From a package on PyPi 2. From scratch
19. Build from PyPi with a Skeleton conda install conda-build conda skeleton pypi mypackage conda build mypackage
20. Result is a Tarball /Users/mike/anaconda/conda-bld/osx-64/mypackage-0.1 .0-py35_0.tar.bz2
21. Install from Local File With full path conda install --use-local mypackage conda install /Users/mike/anaconda/conda-bld/osx-64 /mypackage-0.1.0-py35_0.tar.bz2
22. Specify a Python Version conda build --python 3.4 mypackage
23. Convert to Other Platforms conda convert --platform all ./mypackage-0.1.0-py35 _0.tar.bz2 -o outputdir/
24. Upload to Anaconda Cloud conda install anaconda-client anaconda upload /Users/mike/anaconda/conda-bld/osx- 64/mypackage-0.1.0-py35_0.tar.bz2
25. Building from Scratch meta.yaml build.sh- Linux and Mac OS X build.bat - Windows setup.py - just as with pip
26. The meta.yaml package: name: version: source: git_rev: git_url: requirements: build: - python - setuptools run: - python test: imports: - about: home: license: license_file:
27. Example package: name: mypackage version: 1.0 source: path: ../.. requirements: build: - python - setuptools run: - jupyter - libpython # [win] - numpy - pandas - python - pywin32 # [win] - pyyaml about: home: me license: MIT
28. The Build Files Windows build.bat Linux / OS X build.sh Add more commands as needed "%PYTHON%" setup.py install if errorlevel 1 exit 1 $PYTHON setup.py install
29. Build It Install and upload as with skeleton conda build mypackage
30. Conclusions conda is a great Installer Package manager Environment manager Build tool Works together with pip Well known in the scientific Python community Can be really useful for all Python programmers You should give it a try
31. Thanks - Questions?