$30 off During Our Annual Pro Sale. View Details »

Leighton Pritchard Phytothreats: WP4

Avatar for Forest Research Forest Research
April 21, 2016
Research
0
81

Leighton Pritchard Phytothreats: WP4

Predicting risk by analysis of Phytophthora genome evolution

Avatar for Forest Research

Forest Research

April 21, 2016
Tweet

More Decks by Forest Research

See All by Forest Research
Manion spiral model
Avatar for Forest Research forestresearch
0
1.7k
Armillarria
Avatar for Forest Research forestresearch
0
320
Predisposition of trees
Avatar for Forest Research forestresearch
1
450
Grow wild
Avatar for Forest Research forestresearch
0
240
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
Avatar for Forest Research forestresearch
0
320
Sarah Green (Forest Research)
Avatar for Forest Research forestresearch
0
370
David Cook- Phytothreats: WP1
Avatar for Forest Research forestresearch
0
150
Mariella Marzano Phytothreats: WP2
Avatar for Forest Research forestresearch
0
130
Beth Purse, Dan Chapman Phytothreats: WP3
Avatar for Forest Research forestresearch
0
96

Other Decks in Research

See All in Research
[CV勉強会@関東 CVPR2025] VLM自動運転model S4-Driver
Avatar for Shin-kyoto shinkyoto
2
680
Neural Spatial Audio Processing for Sound Field Analysis and Control
Avatar for NII S. Koyama's Lab skoyamalab
0
110
HoliTracer:Holistic Vectorization of Geographic Objects from Large-Size Remote Sensing Imagery
Avatar for SatAI.challenge satai
3
270
「どう育てるか」より「どう働きたいか」〜スクラムマスターの最初の一歩〜
Avatar for hirakawa hirakawa51
0
1k
学習型データ構造：機械学習を内包する新しいデータ構造の設計と解析
Avatar for Yusuke Matsui matsui_528
4
1.6k
IMC の細かすぎる話 2025
Avatar for @smly smly
2
760
VectorLLM: Human-like Extraction of Structured Building Contours via Multimodal LLMs
Avatar for SatAI.challenge satai
4
450
[IBIS 2025] 深層基盤モデルのための強化学習 驚きから理論にもとづく納得へ
Avatar for Akifumi Wachi akifumi_wachi
13
7.1k
Nullspace MPC
Avatar for MizuhoAOKI mizuhoaoki
1
430
[RSJ25] Enhancing VLA Performance in Understanding and Executing Free-form Instructions via Visual Prompt-based Paraphrasing
Avatar for Semantic Machine Intelligence Lab., Keio Univ. keio_smilab
PRO
0
170
snlp2025_prevent_llm_spikes
Avatar for Sho Takase takase
0
410
ウェブ・ソーシャルメディア論文読み会 第31回: The rising entropy of English in the attention economy. (Commun Psychology, 2024)
Avatar for taichi_murayama hkefka385
1
120

Featured

See All Featured
The Language of Interfaces
Avatar for Des Traynor destraynor
162
25k
I Don’t Have Time: Getting Over the Fear to Launch Your Podcast
Avatar for Joe Casabona jcasabona
34
2.5k
Building a Modern Day 
E-commerce SEO Strategy
Avatar for Aleyda Solis aleyda
45
8.1k
Side Projects
Avatar for Sacha Greif sachag
455
43k
BBQ
Avatar for Matthew Crist matthewcrist
89
9.9k
What’s in a name? Adding method to the madness
Avatar for Product Marketing Alliance productmarketing
PRO
24
3.8k
Improving Core Web Vitals using Speculation Rules API
Avatar for Sergey Chernyshev sergeychernyshev
21
1.3k
The World Runs on Bad Software
Avatar for Brandon Keepers bkeepers
PRO
72
12k
Principles of Awesome APIs and How to Build Them.
Avatar for Keavy McMinn keavy
127
17k
Dealing with People You Can't Stand - Big Design 2015
Avatar for Cassini Nazir cassininazir
367
27k
Evolution of real-time – Irina Nazarova, EuRuKo, 2024
Avatar for Irina Nazarova irinanazarova
9
1.1k
How to Ace a Technical Interview
Avatar for Jacob Kaplan-Moss jacobian
280
24k

Transcript

  1. 2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

  2. SOURCES

  3. Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies

    since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

  4. 10 Genome Portals (various versions) 4 projects: P. capsici, P.

    cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

  5. Short read archive 68 assembly datasets (some duplication/versioning) ENA

  6. (release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,

    1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

  7. STATS

  8. None

  9. Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp

    - 230Mbp total length (median 48Mbp)
  10. None
  11. None

  12. ANIM

  13. None