Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Leighton Pritchard Phytothreats: WP4

Avatar for Forest Research Forest Research
April 21, 2016
Research
0
76

Leighton Pritchard Phytothreats: WP4

Predicting risk by analysis of Phytophthora genome evolution

Avatar for Forest Research

Forest Research

April 21, 2016
Tweet

More Decks by Forest Research

See All by Forest Research
Manion spiral model
Avatar for Forest Research forestresearch
0
1.7k
Armillarria
Avatar for Forest Research forestresearch
0
320
Predisposition of trees
Avatar for Forest Research forestresearch
1
450
Grow wild
Avatar for Forest Research forestresearch
0
240
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
Avatar for Forest Research forestresearch
0
320
Sarah Green (Forest Research)
Avatar for Forest Research forestresearch
0
360
David Cook- Phytothreats: WP1
Avatar for Forest Research forestresearch
0
150
Mariella Marzano Phytothreats: WP2
Avatar for Forest Research forestresearch
0
120
Beth Purse, Dan Chapman Phytothreats: WP3
Avatar for Forest Research forestresearch
0
91

Other Decks in Research

See All in Research
2025/7/5 応用音響研究会招待講演＠北海道大学
Avatar for Takuma OKAMOTO takuma_okamoto
1
220
機械学習と数理最適化の融合 (MOAI) による革新
Avatar for MIKIO KUBO mickey_kubo
1
400
財務諸表監査のための逐次検定
Avatar for MasaKat0 masakat0
0
150
VectorLLM: Human-like Extraction of Structured Building Contours via Multimodal LLMs
Avatar for SatAI.challenge satai
4
330
Mechanistic Interpretability：解釈可能性研究の新たな潮流
Avatar for Koshiro Aoki koshiro_aoki
1
470
IMC の細かすぎる話 2025
Avatar for @smly smly
2
690
EarthDial: Turning Multi-sensory Earth Observations to Interactive Dialogues
Avatar for SatAI.challenge satai
3
240
電通総研の生成AI・エージェントの取り組み エンジニアリング業務向けAI活用事例紹介
Avatar for AITC - DENTSU SOKEN isidaitc
1
1.1k
[RSJ25] Enhancing VLA Performance in Understanding and Executing Free-form Instructions via Visual Prompt-based Paraphrasing
Avatar for Semantic Machine Intelligence Lab., Keio Univ. keio_smilab
PRO
0
140
Hiding What from Whom? A Critical Review of the History of Programming languages for Music
Avatar for Tomoya Matsuura tomoyanonymous
0
200
snlp2025_prevent_llm_spikes
Avatar for Sho Takase takase
0
380
能動適応的実験計画
Avatar for MasaKat0 masakat0
2
850

Featured

See All Featured
Documentation Writing (for coders)
Avatar for Carmen Chung carmenintech
75
5.1k
RailsConf 2023
Avatar for Aaron Patterson tenderlove
30
1.3k
YesSQL, Process and Tooling at Scale
Avatar for Rocio Delgado rocio
173
14k
For a Future-Friendly Web
Avatar for Brad Frost brad_frost
180
10k
The Language of Interfaces
Avatar for Des Traynor destraynor
162
25k
[RailsConf 2023 Opening Keynote] The Magic of Rails
Avatar for Eileen M. Uchitelle eileencodes
31
9.7k
Designing Dashboards & Data Visualisations in Web Apps
Avatar for Des Traynor destraynor
231
53k
Code Review Best Practice
Avatar for Trisha Gee trishagee
72
19k
Git: the NoSQL Database
Avatar for Brandon Keepers bkeepers
PRO
431
66k
CoffeeScript is Beautiful & I Never Want to Write Plain JavaScript Again
Avatar for Sam Stephenson sstephenson
162
15k
Leading Effective Engineering Teams in the AI Era
Avatar for Addy Osmani addyosmani
7
490
Building a Scalable Design System with Sketch
Avatar for Laura Van Doore lauravandoore
463
33k

Transcript

  1. 2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

  2. SOURCES

  3. Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies

    since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

  4. 10 Genome Portals (various versions) 4 projects: P. capsici, P.

    cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

  5. Short read archive 68 assembly datasets (some duplication/versioning) ENA

  6. (release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,

    1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

  7. STATS

  8. None

  9. Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp

    - 230Mbp total length (median 48Mbp)
  10. None
  11. None

  12. ANIM

  13. None