Upgrade to Pro — share decks privately, control downloads, hide ads and more …

Leighton Pritchard Phytothreats: WP4

Sponsored · Your Podcast. Everywhere. Effortlessly. Share. Educate. Inspire. Entertain. You do you. We'll handle the rest. →
Avatar for Forest Research Forest Research
April 21, 2016
Research
110
0

Leighton Pritchard Phytothreats: WP4

Predicting risk by analysis of Phytophthora genome evolution

Avatar for Forest Research

Forest Research

April 21, 2016

More Decks by Forest Research

See All by Forest Research
Manion spiral model
Avatar for Forest Research forestresearch
0
1.8k
Armillarria
Avatar for Forest Research forestresearch
0
350
Predisposition of trees
Avatar for Forest Research forestresearch
1
500
Grow wild
Avatar for Forest Research forestresearch
0
300
A Multifaceted Systems Approach Identifies Polymicrobial Cause of AOD Stem Necrosis
Avatar for Forest Research forestresearch
0
370
Sarah Green (Forest Research)
Avatar for Forest Research forestresearch
0
410
David Cook- Phytothreats: WP1
Avatar for Forest Research forestresearch
0
180
Mariella Marzano Phytothreats: WP2
Avatar for Forest Research forestresearch
0
160
Beth Purse, Dan Chapman Phytothreats: WP3
Avatar for Forest Research forestresearch
0
120

Other Decks in Research

See All in Research
YOLO26_ Key Architectural Enhancements and Performance Benchmarking for Real-Time Object Detection
Avatar for SatAI.challenge satai
3
750
2026 東京科学大 情報通信系 研究室紹介 (大岡山)
Avatar for Tokyo Tech ICT Dept. icttitech
0
3.5k
Can We Teach Logical Reasoning to LLMs? – An Approach Using Synthetic Corpora (AAAI 2026 bridge keynote)
Avatar for もりし morishtr
1
240
進学校の生徒にはア行の苗字が多いのか
Avatar for Takashi Ozeki ozekinote
0
410
ローテーション別のサイドアウト戦略 ~なぜあのローテは回らないのか？~
Avatar for ぱんだ vball_panda
0
330
CyberAgent AI Lab研修 / Social Implementation Anti-Patterns in AI Lab
Avatar for chck chck
7
4.5k
衛星×エッジAI勉強会 衛星上におけるAI処理制約とそ取組について
Avatar for SatAI.challenge satai
4
500
老舗ものづくり企業でリサーチが変革を起こすまで - 三菱重工DXの実践
Avatar for kazu skydats
0
160
National high-resolution cropland classification of Japan with agricultural census information and multi-temporal multi-modality datasets
Avatar for SatAI.challenge satai
2
230
存立危機事態の再検討
Avatar for Ken Jimbo jimboken
0
280
第66回コンピュータビジョン勉強会＠関東 Epona: Autoregressive Diffusion World Model for Autonomous Driving
Avatar for Kento Sasaki kentosasaki
0
610
ペットのかわいい瞬間を撮影する オートシャッターAIアプリへの スマートラベリングの適用
Avatar for Convergence Lab. mssmkmr
0
500

Featured

See All Featured
The agentic SEO stack - context over prompts
Avatar for schlessera schlessera
0
790
Exploring the Power of Turbo Streams & Action Cable | RailsConf2023
Avatar for Kevin Liebholz kevinliebholz
37
6.4k
Unlocking the hidden potential of vector embeddings in international SEO
Avatar for Frank van Dijk frankvandijk
0
820
Beyond borders and beyond the search box: How to win the global "messy middle" with AI-driven SEO
Avatar for David Carrasco davidcarrasco
3
140
Between Models and Reality
Avatar for mayunak mayunak
4
310
First, design no harm
Avatar for Per Axbom axbom
PRO
2
1.2k
Put a Button on it: Removing Barriers to Going Fast.
Avatar for kastner kastner
60
4.3k
Facilitating Awesome Meetings
Avatar for Lara Hogan lara
57
6.9k
Are puppies a ranking factor?
Avatar for Jono Alderson jonoalderson
1
3.4k
Design and Strategy: How to Deal with People Who Don’t "Get" Design
Avatar for Morgane Peng morganepeng
133
19k
Hiding What from Whom? A Critical Review of the History of Programming languages for Music
Avatar for Tomoya Matsuura tomoyanonymous
2
820
Bootstrapping a Software Product
Avatar for Garrett Dimon garrettdimon
PRO
307
120k

Transcript

  1. 2016-04-21 THAPBI PHYTO-THREATS PUBLICLY-AVAILABLE PHYTOPHTHORA GENOME DATA

  2. SOURCES

  3. Taxonomy ID: 4783 66 Assemblies, 20 species 2 new assemblies

    since last meeting 118 BioProjects (each with >= 1 assembly) NCBI/RefSeq

  4. 10 Genome Portals (various versions) 4 projects: P. capsici, P.

    cinnamomi, P. ramorum, P. sojae (and an endornavirus…) Data also at NCBI JGI

  5. Short read archive 68 assembly datasets (some duplication/versioning) ENA

  6. (release 31 current) 14 genomes (duplication of NCBI) 1xP. infestans,

    1xP. kernoviae, 1xP. lateralis, 9xP. parasitica, 1xP. ramorum, 1xP. sojae Ensembl Compara All-vs-all synteny comparisons not available (also ) Ensembl Protists downloadable downloadable PhytoPath

  7. STATS

  8. None

  9. Assemblies variable 82 contigs - 250k contigs (median 4500) 36Mbp

    - 230Mbp total length (median 48Mbp)
  10. None
  11. None

  12. ANIM

  13. None