Upgrade to Pro — share decks privately, control downloads, hide ads and more …

ROSIE: Automated Image Processing Infrastructure

Avatar for Scott Burns Scott Burns
June 06, 2012
Science
0
140

ROSIE: Automated Image Processing Infrastructure

I presented ROSIE at the 2012 VUIIS Retreat.
Avatar for Scott Burns

Scott Burns

June 06, 2012
Tweet

More Decks by Scott Burns

See All by Scott Burns
Learning From the Pros: Modern Data Management for Clinicians and Scientists
Avatar for Scott Burns sburns
1
39
Confident Asset Deployments with Webpack & Django
Avatar for Scott Burns sburns
0
1.2k
An Introduction to Channels
Avatar for Scott Burns sburns
0
240
Empathy-as-a-Service
Avatar for Scott Burns sburns
0
97
Improving Research With Advanced REDCap Interfaces
Avatar for Scott Burns sburns
1
650

Other Decks in Science

See All in Science
Valuable Lessons Learned on Kaggle’s ARC AGI LLM Challenge (PyDataGlobal 2024)
Avatar for ianozsvald ianozsvald
0
390
ガウス過程回帰とベイズ最適化
Avatar for NearMeの技術発表資料です nearme_tech
PRO
1
430
ほたるのひかり/RayTracingCamp10
Avatar for kugi kugimasa
1
710
03_草原和博_広島大学大学院人間社会科学研究科教授_デジタル_シティズンシップシティで_新たな_学び__をつくる.pdf
Avatar for Sip3ristex sip3ristex
0
470
[第62回 CV勉強会＠関東] Long-CLIP: Unlocking the Long-Text Capability of CLIP / kantoCV 62th ECCV 2024
Avatar for ライチ lychee1223
1
940
サイゼミ用因果推論
Avatar for LW lw
1
7.3k
KH Coderチュートリアル（スライド版）
Avatar for HIGUCHI Koichi koichih
1
40k
Cross-Media Information Spaces and Architectures (CISA)
Avatar for Beat Signer signer
PRO
3
31k
Design of three-dimensional binary manipulators for pick-and-place task avoiding obstacles (IECON2024)
Avatar for konakalab konakalab
0
210
統計学入門講座 第2回スライド
Avatar for TechmathProject techmathproject
0
130
データベース06: SQL (3/3) 副問い合わせ
Avatar for Y. Yamamoto trycycle
PRO
1
540
メール送信サーバの集約における透過型SMTP プロキシの定量評価 / Quantitative Evaluation of Transparent SMTP Proxy in Email Sending Server Aggregation
Avatar for linyows linyows
0
930

Featured

See All Featured
The Art of Programming - Codeland 2020
Avatar for Erika Heidi erikaheidi
54
13k
Evolution of real-time – Irina Nazarova, EuRuKo, 2024
Avatar for Irina Nazarova irinanazarova
8
790
Into the Great Unknown - MozCon
Avatar for Noah Learner thekraken
39
1.9k
BBQ
Avatar for Matthew Crist matthewcrist
89
9.7k
Creating an realtime collaboration tool: Agile Flush - .NET Oxford
Avatar for Marc Duiker marcduiker
30
2.1k
How STYLIGHT went responsive
Avatar for nonsquared nonsquared
100
5.6k
How GitHub (no longer) Works
Avatar for Zach Holman holman
314
140k
Site-Speed That Sticks
Avatar for Harry Roberts csswizardry
10
650
GraphQLの誤解/rethinking-graphql
Avatar for sonatard sonatard
71
11k
How to Create Impact in a Changing Tech Landscape [PerfNow 2023]
Avatar for Tammy Everts tammyeverts
53
2.8k
The Pragmatic Product Professional
Avatar for Laura Van Doore lauravandoore
35
6.7k
The Art of Delivering Value - GDevCon NA Keynote
Avatar for David Neal reverentgeek
15
1.5k

Transcript

  1. ROSIE An Automated Image Processing Infrastructure Scott Burns Education and

    Brain Science Research Lab [email protected] Intro Why What Input Import Processing Web End

  2. Common Problems Raw Data > RA RA RA Acquisition Analysis

    Intro Why What Input Import Processing Web End

  3. Intro Why What Input Import Processing Web End

  4. REDCap Intro Why What Input Import Processing Web End

  5. Session Number Normal Session? Run # : Image Type Intro

    Why What Input Import Processing Web End

  6. Import Intro Why What Input Import Processing Web End

  7. Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What

    Input Import Processing Web End

  8. ACCRE Processing Intro Why What Input Import Processing Web End

  9. fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level

    scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP

  10. Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •

    Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation

  11. Web Architecture Intro Why What Input Import Processing Web End

  12. Web App: Projects Intro Why What Input Import Processing Web

    End

  13. Web App: Subjects Intro Why What Input Import Processing Web

    End

  14. Web App: Logs Intro Why What Input Import Processing Web

    End

  15. Web App: Job Results Intro Why What Input Import Processing

    Web End

  16. Upcoming Features • Mining processed results for REDCap import •

    Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End

  17. Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl

    Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End

  18. Questions Intro Why What Input Import Processing Web End