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ROSIE: Automated Image Processing Infrastructure

Avatar for Scott Burns Scott Burns
June 06, 2012
Science
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ROSIE: Automated Image Processing Infrastructure

I presented ROSIE at the 2012 VUIIS Retreat.

Avatar for Scott Burns

Scott Burns

June 06, 2012
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Transcript

  1. ROSIE An Automated Image Processing Infrastructure Scott Burns Education and

    Brain Science Research Lab [email protected] Intro Why What Input Import Processing Web End

  2. Common Problems Raw Data > RA RA RA Acquisition Analysis

    Intro Why What Input Import Processing Web End

  3. Intro Why What Input Import Processing Web End

  4. REDCap Intro Why What Input Import Processing Web End

  5. Session Number Normal Session? Run # : Image Type Intro

    Why What Input Import Processing Web End

  6. Import Intro Why What Input Import Processing Web End

  7. Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What

    Input Import Processing Web End

  8. ACCRE Processing Intro Why What Input Import Processing Web End

  9. fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level

    scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP

  10. Structural T1: Freesurfer • Relatively simple (recon-all -s ...) •

    Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation

  11. Web Architecture Intro Why What Input Import Processing Web End

  12. Web App: Projects Intro Why What Input Import Processing Web

    End

  13. Web App: Subjects Intro Why What Input Import Processing Web

    End

  14. Web App: Logs Intro Why What Input Import Processing Web

    End

  15. Web App: Job Results Intro Why What Input Import Processing

    Web End

  16. Upcoming Features • Mining processed results for REDCap import •

    Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End

  17. Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl

    Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End

  18. Questions Intro Why What Input Import Processing Web End