ROSIE: Automated Image Processing Infrastructure

I presented ROSIE at the 2012 VUIIS Retreat.

Transcript

1. ROSIE An Automated Image Processing Infrastructure Scott Burns Education and Brain Science Research Lab scott.s.burns@vanderbilt.edu Intro Why What Input Import Processing Web End
2. Common Problems Raw Data > RA RA RA Acquisition Analysis Intro Why What Input Import Processing Web End
3. Intro Why What Input Import Processing Web End
4. REDCap Intro Why What Input Import Processing Web End
5. Session Number Normal Session? Run # : Image Type Intro Why What Input Import Processing Web End
6. Import Intro Why What Input Import Processing Web End
7. Organizing Images •/home/CHI/getstudy .... •rsync ... ... Intro Why What Input Import Processing Web End
8. ACCRE Processing Intro Why What Input Import Processing Web End
9. fMRI: SPM • Automatically creates preprocessing, artifact detection and first-level scripts to produce first-level contrast and T-maps. Intro Why What Input Import Processing Web End Head motion Artifact Detection T Statistic MIP
10. Structural T1: Freesurfer • Relatively simple (recon-all -s ...) • Take screenshots for manual QA Intro Why What Input Import Processing Web End w,g/m segmentation auto parcellation
11. Web Architecture Intro Why What Input Import Processing Web End
12. Web App: Projects Intro Why What Input Import Processing Web End
13. Web App: Subjects Intro Why What Input Import Processing Web End
14. Web App: Logs Intro Why What Input Import Processing Web End
15. Web App: Job Results Intro Why What Input Import Processing Web End
16. Upcoming Features • Mining processed results for REDCap import • Full-featured web app • NiPype for batch generation/execution • VUIIS XNAT as raw image source and results storage Intro Why What Input Import Processing Web End
17. Thank you • Drs. Laurie Cutting, Nikki Davis and Sheryl Rimrodt • R01HD044073 and R01HD067254 • REDCap (1 UL1 RR024975) Intro Why What Input Import Processing Web End
18. Questions Intro Why What Input Import Processing Web End