• Cytoscape App Store: http://apps.cytoscape.org/ • Open Tutorials: http://opentutorials.cgl.ucsf.edu/index.php/Portal:Cytoscape • Cytoscape Wiki: http://wiki.cytoscape.org/ • Cytoscape Help Desk: https://groups.google.com/forum/?fromgroups#!forum/cytoscape-helpdesk • Cytoscape Discussion: https://groups.google.com/forum/?fromgroups#!forum/cytoscape-discuss Publications about Cytoscape A travel guide to Cytoscape plugins Rintaro Saito, Michael E Smoot, Keiichiro Ono, Johannes Ruscheinski, Peng-‐Liang Wang, Samad Lotia, Alexander R Pico, Gary D Bader, Trey Ideker (2012) Nature Methods 9 (11) p. 1069-‐1076 Cytoscape 2.8: new features for data integration and network visualization Michael Smoot, Keiichiro Ono, Johannes Ruscheinski, Peng-‐Liang Wang, Trey Ideker Bioinformatics. 2011 February 1; 27(3): 431–432.Published online 2010 December 12. Integration of biological networks and gene expression data using Cytoscape Melissa S Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, et al. Nature Protocols 2, 2366 -‐ 2382 (2007) Published online: 27 September 2007 | doi:10.1038/nprot.2007.324