Dash Cytoscapeで始めるネットワーク可視化 / plotly dash book

%BTI$ZUPTDBQFͰ࢝ΊΔ ωοτϫʔΫՄࢹԽ 1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳ $07*%ͷσʔλΛ࢖ͬͨΠϯλϥΫςΟϒՄࢹԽࣄྫ

!LPNP@GS ࣗݾ঺հ 2 ‣ ݹ໦༑ࢠ ‣ 5XJUUFS!LPNP@GS ‣ 1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳ ‣
%BTI$ZUPTDBQFؔ࿈ষʢ ষʣΛ୲౰ ‣ ࢓ࣄ ‣ 1ZUIPOʹΑΔσʔλղੳɺιϑτ΢ΤΞ։ൃ ‣ גࣜձࣾϏʔϓϥ΢υ ‣ ౦ژେֶઌ୺Պֶٕज़ݚڀηϯλʔ ‣ ීஈͷۀ຿Ͱ΋QMPUMZΛ࢖͍ͬͯ·͢ ‣ 1ZUIPOίϛϡχςΟʹ͓͚Δొஃྺ ‣ 1Z$PO+1 UBML ‣ &VSP1ZUIPO -5 &VSP1ZUIPO!εΠε

!LPNP@GS 1&1ؒͷҾ༻ؔ܎ωοτϫʔΫ 3 ࣮૷͸CPLFI

!LPNP@GS "HFOEB ‣ ωοτϫʔΫՄࢹԽͱ͸ ‣ $07*%࿦จωοτϫʔΫͷྫɾσϞ ‣ ωοτϫʔΫՄࢹԽͷجຊ ‣ 1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏
‣ %BTI$UZUPTDBQFͷಛ௃ɾίʔυྫ ‣ ·ͱΊ 4

!LPNP@GS ωοτϫʔΫՄࢹԽͱ͸ ‣ ʮԿ͔ʯͱʮԿ͔ʯͷؔ܎ΛՄࢹԽ͢Δख๏ͷͻͱͭ ‣ σʔλͱσʔλͷؔ܎ʹண໨͢Δ͜ͱͰɺ σʔλ୯ମͷଐੑͰ͸Θ͔Βͳ͍ੑ࣭Λ୳Δ ‣ ྫ ‣
࿦จͱ࿦จͷҾ༻ؔ܎ ‣ ༑ਓؔ܎ 5 ϊʔυ ϊʔυ Τοδ ۭखΫϥϒͷ ༑ਓؔ܎ωοτϫʔΫ ϊʔυ෦һ Τοδަ༑ؔ܎ ৭ॴଐ೿ൊʢ෦௕೿ࢣൣ೿ʣ

!LPNP@GS ωοτϫʔΫσʔλͷྫ w IUUQOFUXPSLSFQPTJUPSZDPN 6

!LPNP@GS $07*%ؔ࿈ͷ࿦จωοτϫʔΫ ‣ $03%ʢ$07*%0QFO3FTFBSDI%BUBTFU$IBMMFOHFʣ ‣ $07*%ؔ࿈࿦จΛͷτϐοΫʹ෼ྨ͠Ҿ༻ؔ܎Λදࣔ ‣ 7 ৭࿦จͷτϐοΫ ϊʔυαΠζඃҾ༻਺
දࣔର৅ͱͳΔ ඃҾ༻਺ͷ࠷খ஋ ެ։ઌͷδϟʔφϧ Τοδͷදࣔɾඇදࣔ ੾ସ IUUQTEBTIHBMMFSZQMPUMZIPTUEBTIDZUPTDBQFMEB

!LPNP@GS ωοτϫʔΫՄࢹԽͷجຊ ‣ ߏ੒ཁૉʢϊʔυͱΤοδʣ ‣ ʮԿͱԿ͕ؔ܎͋Δ͔ʯΛࣔ͢ߏ଄ ‣ Կͷϊʔυ͕͋Δ͔ɺͲͷϊʔυಉ࢜ʹΤοδ͕ுΒΕ͍ͯΔ͔ ‣ ελΠϧʢେ͖͞ɺ৭ɺܗঢ়ͳͲʣ
‣ ͨ͘͞Μͷ࿦จ͔ΒҾ༻͞Ε͍ͯͨΒେ͖͘͢Δ ‣ ࿦จͷΧςΰϦ͝ͱʹ৭Λม͑Δ ‣ Ҿ༻ճ਺͕ଟ͍΄ͲΤοδΛଠ͘͢Δ ‣ ϊʔυͷ഑ஔ ‣ ෺ཧతͳҐஔͱϊʔυͷ഑ஔΛҰகͤ͞Δ ‣ Ӻ΍ۭߓͷަ௨ωοτϫʔΫͳͲ ‣ ͹ͶྗֶΛ༻͍ͯɺࢹೝੑ͕ߴ͍Α͏ʹ഑ஔ͢Δ 8

!LPNP@GS ωοτϫʔΫՄࢹԽΛΠϯλϥΫςΟϒʹߦ͏ར఺ 9 ‣ ϊʔυͷ਺͕૿͑Δͱɺ੩ࢭըͰ͸ݶք͕͋Δ ‣ ϊʔυΛΫϦοΫͯ͠ɺྡ઀͢ΔϊʔυΛڧௐ͢Δ ‣ ϊʔυΛಈ͔ͯ͠ߏ଄Λ೺Ѳ͠΍͘͢͢Δ ‣
֦େɾॖখͰશମͱ෦෼Λߦ͖དྷ͢Δ ‣ 6*Λ࢖ͬͯɺදࣔ͢Δϊʔυ΍ ഑ஔɾελΠϧΛมߋ͢Δ ‣ ͳͲ ‣ ʮབྷ·ͬͨڊେͳໟۄʯ໰୊ ‣ ϊʔυ͕ଟ͗ͯ͢ Կͷ͜ͱ͔Θ͔Βͳ͍ঢ়ଶͷ ωοτϫʔΫ

!LPNP@GS 1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏ ‣ /FUXPSL9 ‣ ωοτϫʔΫ෼ੳͷͨΊͷύοέʔδ ‣ ՄࢹԽ෦෼͸NBUQMPUMJCʹґଘʢ੩ࢭը૾ͷΈʣ ‣ %BTI$ZUPTDBQF
‣ %BTIͷ௥Ճίϯϙʔωϯτ ‣ $ZUPTDBQFKTʹґଘɻ$ZUPTDBQFKTͷػೳΛར༻Ͱ͖Δɻ༗޲άϥϑʹ΋ରԠɻ ‣ #PLFI ‣ ಠ࣮ࣗ૷ɻ༗޲άϥϑʹ͸ະରԠɻ/FUXPSL9ͱͷ࿈ܞ͕εϜʔζɻϗόʔʹΑΔৄࡉද͕ࣔՄɻ ‣ TUSFBNMJUBHSBQI ‣ 4USFBNMJUͷ௥Ճίϯϙʔωϯτ ‣ SFBDUEHSBQIʹґଘ ‣ ʹϦϦʔε͞Εɺ·ͩ৘ใ͕গͳ͍ʢ(JU)VCͷTUBS਺΋ʣ 10 ΠϯλϥΫςΟϒͳՄࢹԽ

!LPNP@GS %BTI$ZUPTDBQFͷಛ௃ ‣ ωοτϫʔΫՄࢹԽΛߦ͏ͨΊͷ%BTIͷίϯϙʔωϯτ ‣ (JU)VCIUUQTHJUIVCDPNQMPUMZEBTIDZUPTDBQF ‣ $ZUPTDBQFKTͷϥούͰ͋ΔͨΊɺ$ZUPTDBQFKTͷػೳͷҰ෦ ʢϊʔυͷ഑ஔΞϧΰϦζϜͳͲʣΛར༻Ͱ͖Δ ‣
$ZUPTDBQF ωοτϫʔΫͷ ՄࢹԽͱ෼ੳ͕ ߦ͑Δ044ͷ ϓϥοτϑΥʔϜ 11

!LPNP@GS %BTI$ZUPTDBQFͷجຊɾίʔυྫ ‣ QJQJOTUBMMEBTIDZUPTDBQF 12 ߏ੒ཁૉ ϊʔυͷ഑ஔ ελΠϧ ϊʔυͷఆٛ Τοδͷఆٛ
ϊʔυશମʹର͢ΔελΠϧ ϊʔυ#ʹର͢ΔελΠϧ

!LPNP@GS ίʔϧόοΫͷར༻ ‣ %BTIಉ༷ίʔϧόοΫΛ࢖ͬͯɺ ߏ੒ཁૉελΠϧ഑ஔΛมߋͰ͖Δ 13

!LPNP@GS ·ͱΊ ‣ ωοτϫʔΫՄࢹԽͷجຊදݱʹ͍ͭͯ঺հ͠·ͨ͠ ‣ ߏ੒ཁૉελΠϧϊʔυͷ഑ஔ ‣ 1ZUIPOͰ࢖༻Ͱ͖Δύοέʔδͱɺ %BTI$ZUPTDBQFͷಛ௃ɾجຊʹ͍ͭͯ঺հ͠·ͨ͠ ‣
%BTI$ZUPTDBQFެࣜυΩϡϝϯτ ‣ IUUQTEBTIQMPUMZDPNDZUPTDBQF ‣ (JU)VC ‣ IUUQTHJUIVCDPNQMPUMZEBTIDZUPTDBQF 14

Dash Cytoscapeで始めるネットワーク可視化 / plotly dash book

Dash Cytoscapeで始めるネットワーク可視化 / plotly dash book

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%BTI$ZUPTDBQFͰ࢝ΊΔ ωοτϫʔΫՄࢹԽ 1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳ $07*%ͷσʔλΛ࢖ͬͨΠϯλϥΫςΟϒՄࢹԽࣄྫ

!LPNP@GS ࣗݾ঺հ 2 ‣ ݹ໦༑ࢠ ‣ 5XJUUFS!LPNP@GS ‣ 1ZUIPOΠϯλϥΫςΟϒɾσʔλϏδϡΞϥΠθʔγϣϯೖ໳ ‣

!LPNP@GS 1&1ؒͷҾ༻ؔ܎ωοτϫʔΫ 3 ࣮૷͸CPLFI

!LPNP@GS "HFOEB ‣ ωοτϫʔΫՄࢹԽͱ͸ ‣ $07*%࿦จωοτϫʔΫͷྫɾσϞ ‣ ωοτϫʔΫՄࢹԽͷجຊ ‣ 1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏

!LPNP@GS ωοτϫʔΫՄࢹԽͱ͸ ‣ ʮԿ͔ʯͱʮԿ͔ʯͷؔ܎ΛՄࢹԽ͢Δख๏ͷͻͱͭ ‣ σʔλͱσʔλͷؔ܎ʹண໨͢Δ͜ͱͰɺ σʔλ୯ମͷଐੑͰ͸Θ͔Βͳ͍ੑ࣭Λ୳Δ ‣ ྫ ‣

!LPNP@GS ωοτϫʔΫσʔλͷྫ w IUUQOFUXPSLSFQPTJUPSZDPN 6

!LPNP@GS $07%ؔ࿈ͷ࿦จωοτϫʔΫ ‣ $03%ʢ$07%0QFO3FTFBSDI%BUBTFU$IBMMFOHFʣ ‣ $07*%ؔ࿈࿦จΛͷτϐοΫʹ෼ྨ͠Ҿ༻ؔ܎Λදࣔ ‣ 7 ৭࿦จͷτϐοΫ ϊʔυαΠζඃҾ༻਺

!LPNP@GS ωοτϫʔΫՄࢹԽͷجຊ ‣ ߏ੒ཁૉʢϊʔυͱΤοδʣ ‣ ʮԿͱԿ͕ؔ܎͋Δ͔ʯΛࣔ͢ߏ଄ ‣ Կͷϊʔυ͕͋Δ͔ɺͲͷϊʔυಉ࢜ʹΤοδ͕ுΒΕ͍ͯΔ͔ ‣ ελΠϧʢେ͖͞ɺ৭ɺܗঢ়ͳͲʣ

!LPNP@GS ωοτϫʔΫՄࢹԽΛΠϯλϥΫςΟϒʹߦ͏ར఺ 9 ‣ ϊʔυͷ਺͕૿͑Δͱɺ੩ࢭըͰ͸ݶք͕͋Δ ‣ ϊʔυΛΫϦοΫͯ͠ɺྡ઀͢ΔϊʔυΛڧௐ͢Δ ‣ ϊʔυΛಈ͔ͯ͠ߏ଄Λ೺Ѳ͠΍͘͢͢Δ ‣

!LPNP@GS 1ZUIPOͰωοτϫʔΫՄࢹԽΛߦ͏ํ๏ ‣ /FUXPSL9 ‣ ωοτϫʔΫ෼ੳͷͨΊͷύοέʔδ ‣ ՄࢹԽ෦෼͸NBUQMPUMJCʹґଘʢ੩ࢭը૾ͷΈʣ ‣ %BTI$ZUPTDBQF

!LPNP@GS %BTI$ZUPTDBQFͷಛ௃ ‣ ωοτϫʔΫՄࢹԽΛߦ͏ͨΊͷ%BTIͷίϯϙʔωϯτ ‣ (JU)VCIUUQTHJUIVCDPNQMPUMZEBTIDZUPTDBQF ‣ $ZUPTDBQFKTͷϥούͰ͋ΔͨΊɺ$ZUPTDBQFKTͷػೳͷҰ෦ ʢϊʔυͷ഑ஔΞϧΰϦζϜͳͲʣΛར༻Ͱ͖Δ ‣

!LPNP@GS %BTI$ZUPTDBQFͷجຊɾίʔυྫ ‣ QJQJOTUBMMEBTIDZUPTDBQF 12 ߏ੒ཁૉ ϊʔυͷ഑ஔ ελΠϧ ϊʔυͷఆٛ Τοδͷఆٛ

!LPNP@GS ίʔϧόοΫͷར༻ ‣ %BTIಉ༷ίʔϧόοΫΛ࢖ͬͯɺ ߏ੒ཁૉελΠϧ഑ஔΛมߋͰ͖Δ 13

!LPNP@GS ·ͱΊ ‣ ωοτϫʔΫՄࢹԽͷجຊදݱʹ͍ͭͯ঺հ͠·ͨ͠ ‣ ߏ੒ཁૉελΠϧϊʔυͷ഑ஔ ‣ 1ZUIPOͰ࢖༻Ͱ͖Δύοέʔδͱɺ %BTI$ZUPTDBQFͷಛ௃ɾجຊʹ͍ͭͯ঺հ͠·ͨ͠ ‣