human Embryo development 90 Tang et al Goolam mouse Embryo development 124 Smart-Seq2 Deng mouse Embryo development 268 Smart-Seq Smart-Seq2 Pollen human Cerebral cortex 301 SMARTer Li human Colorectal tumors 561 SMARTer Usoskin mouse Brain 622 STRT-Seq Kolodziejczyk mouse Embryo stem cells 704 SMARTer Xin human Pancreas 1492 SMARTer Tasic mouse Cortex 1679 SMARTer Baron mouse Pancreas 1886 inDrop Muraro human Pancreas 2126 CEL-Seq2 Segerstolpe human Pancreas 2209 Smart-Seq2 Klein mouse Embryo stem cells 2717 inDrop Zeisel mouse Brain 3005 STRT-Seq UMI Baron human Pancreas 8569 inDrop Shekhar mouse Retina 27499 Drop-Seq Macosko mouse Retina 44808 Drop-Seq We used publicly available datasets to validate and benchmark scmap In all datasets the cell types were identified by the authors